Dataset Browser

Search by the datasets. For a single dataset, TISCH provides meta information, cell-type annotation, expression visualization, differential gene expression, and GSEA results. For multiple datasets, TISCH provides gene expression comparison.

Return 79 across 79 datasets

Dataset Name Species Treatment Patients Cells Platform Pri / Meta Sorting Publication
AEL_GSE142213 Human None 2 3,994 10x Genomics Primary All Di Genua C, et al. Cancer Cell 2020
ALL_GSE132509 Human None 11 37,936 10x Genomics Primary All Caron M, et al. Sci Rep 2020
AML_GSE116256 Human None 21 38,348 Smart-seq2 Primary All van Galen P, et al. Cell 2019
AML_GSE147989 Human Targeted therapy 2 7,389 10x Genomics Primary CD34+ AML cells Riether C, et al. Nat Med 2020
BCC_GSE123813_aPD1 Human Immunotherapy 11 52,884 10x Genomics Metastatic All Yost KE, et al. Nat Med 2019
BLCA_GSE130001 Human None 2 4,129 10x Genomics Primary Non-immune Wang L, et al. Genome Med 2020
BLCA_GSE145281_aPDL1 Human Immunotherapy 10 14,462 10x Genomics Metastatic All Yuen KC, et al. Nat Med 2020
BRCA_GSE110686 Human None 2 6,035 10x Genomics Pri, Meta CD3+ T Savas P, et al. Nat Med 2018
BRCA_GSE114727_10X Human None 3 28,678 10x Genomics Primary CD3+ T Azizi E, et al. Cell 2018
BRCA_GSE114727_inDrop Human None 8 19,676 inDrop Primary Immune Azizi E, et al. Cell 2018
BRCA_GSE136206_mouse_aPD1aCTLA4 Mouse Immunotherapy NA 27,532 10x Genomics Primary All Hollern DP, et al. Cell 2019
BRCA_GSE138536 Human None 8 1,902 Smart-seq2 Primary All Gulati GS, et al. Science 2020
BRCA_GSE143423 Human None 1 4,375 10x Genomics Metastatic All Weilin Jin, et al.
BRCA_SRP114962 Human Chemotherapy 8 2,472 SNRS Primary All Kim C, et al. Cell 2018
CHOL_GSE125449_aPD1aPDL1aCTLA4 Human Immunotherapy 10 5,761 10x Genomics Primary All Lichun Ma, et al. Cancer Cell 2019
CLL_GSE111014 Human Targeted therapy 4 30,106 10x Genomics Primary Immune Rendeiro AF, et al. Nat Commun 2020
CLL_GSE125881 Human Immunotherapy 4 60,528 10x Genomics Primary CD8+ CAR-T Sheih A, et al. Nat Commun 2020
CRC_GSE108989 Human None 12 11,125 Smart-seq2 Primary CD8+ T Zhang L, et al. Nature 2018
CRC_GSE112865_mouse_aPD1 Mouse Immunotherapy NA 4,454 10x Genomics Primary Immune Arlauckas SP, et al. Theranostics 2018
CRC_GSE120909_mouse_aPD1 Mouse Immunotherapy NA 1,881 Smart-seq Primary CD8+ T Wang B, et al. Sci Immunol 2018
CRC_GSE122969_mouse_aPD1aTIM3 Mouse Immunotherapy NA 5,457 10x Genomics Primary CD8+ T Kurtulus S, et al. Immunity 2019
CRC_GSE136394 Human Immunotherapy 5 67,171 10x Genomics Pri, Meta Immune Lu YC, et al. Cancer Immunol Res 2019
CRC_GSE139555 Human None 2 10,112 10x Genomics Primary Immune Wu TD, et al. Nature 2020
CRC_GSE146771_10X Human None 10 43,817 10x Genomics Primary Immune Zhang L, et al. Cell 2020
CRC_GSE146771_Smartseq2 Human None 10 10,468 Smart-seq2 Primary All Zhang L, et al. Cell 2020
Glioma_GSE102130 Human None 6 3,321 Smart-seq2 Primary All Filbin MG, et al. Science 2018
Glioma_GSE103224 Human None 8 17,185 Microwell Primary All Yuan J, et al. Genome Med 2018
Glioma_GSE131928_10X Human None 9 13,553 10x Genomics Primary Non-immune Neftel C, et al. Cell 2019
Glioma_GSE131928_Smartseq2 Human None 28 7,930 Smart-seq2 Primary Non-immune Neftel C, et al. Cell 2019
Glioma_GSE135437 Human None 19 12,559 mCEL-Seq2 Pri, Meta All Sankowski R, et al. Nat Neurosci 2019
Glioma_GSE138794 Human None 9 18,458 10x Genomics Primary All Wang L, et al. Cancer Discov 2019
Glioma_GSE139448 Human None 3 12,152 10x Genomics Primary All Wang R, et al. Stem Cell Reports 2020
Glioma_GSE141982 Human None 2 5,263 10x Genomics Primary All Wang L, et al. Bioinformatics 2020
Glioma_GSE148842 Human None 7 111,397 Microwell Primary Non-immune Zhao W, et al.
Glioma_GSE70630 Human None 6 4,347 Smart-seq2 Primary All Tirosh I, et al. Nature 2016
Glioma_GSE84465 Human None 4 3,533 Smart-seq2 Primary All Darmanis S, et al. Cell Rep 2017
Glioma_GSE89567 Human None 10 6,341 Smart-seq2 Primary All Venteicher AS, et al. Science 2017
HNSC_GSE103322 Human None 18 5,902 Smart-seq2 Primary All Puram SV, et al. Cell 2018
HNSC_GSE139324 Human None 26 130,721 10x Genomics Primary Immune Cillo AR, et al. Immunity 2020
KIRC_GSE111360 Human None 2 23,130 10x Genomics Primary Immune Neal JT, et al. Cell 2018
KIRC_GSE139555 Human None 3 49,907 10x Genomics Primary Immune Wu TD, et al. Nature 2020
KIRC_GSE145281_aPDL1 Human Immunotherapy 4 44,220 10x Genomics Metastatic All Yuen KC, et al. Nat Med 2020
LIHC_GSE125449_aPDL1aCTLA4 Human Immunotherapy 9 3,834 10x Genomics Primary All Ma L, et al.Cancer Cell 2019
LIHC_GSE140228_10X Human None 5 62,530 10x Genomics Primary Immune Zhang Q, et al. Cell 2019
LIHC_GSE140228_Smartseq2 Human None 6 7,074 Smart-seq2 Primary Immune Zhang Q, et al. Cell 2019
LIHC_GSE98638 Human None 6 5,059 Smart-seq2 Primary CD3+ T Zheng C, et al. Cell 2017
MB_GSE119926 Human None 25 7,745 Smart-seq2 Pri, Meta Immune Hovestadt V, et al. Nature 2019
MCC_GSE117988_aPD1aCTLA4 Human Immunotherapy 1 10,134 10x Genomics Metastatic All Paulson KG, et al. Nat Commun 2018
MCC_GSE118056_aPDL1 Human Immunotherapy 1 11,024 10x Genomics Primary All Paulson KG, et al. Nat Commun 2018
MM_GSE117156 Human Targeted therapy 14 24,918 MARS-seq Primary Plasma Ledergor G, et al. Nat Med 2018
MM_GSE141299 Human None 7 16,840 10x Genomics Primary All Shirayeh AM, et al.
NET_GSE140312 Human None 1 3,158 10x Genomics Pri, Meta All Rao M, et al. CSH Mol Case Stud 2020
NHL_GSE128531 Human None 9 30,497 10x Genomics Primary CD3+ T Gaydosik AM, et al. Clin Cancer Res 2019
NSCLC_EMTAB6149 Human None 5 40,218 10x Genomics Primary All Lambrechts D, et al. Nat Med 2018
NSCLC_GSE117570 Human None 4 11,453 10x Genomics Primary All Song Q, et al. Cancer Med 2019
NSCLC_GSE127465 Human None 7 31,179 inDrop Primary All Zilionis R, et al. Immunity 2019
NSCLC_GSE127471 Human None 1 1,108 10x Genomics Primary All Newman AM, et al. Nat Biotechnol 2019
NSCLC_GSE131907 Human None 44 203,298 10x Genomics Pri, Meta All Kim N, et al. Nat Commun 2020
NSCLC_GSE139555 Human None 6 78,829 10x Genomics Primary Immune Wu TD, et al. Nature 2020
NSCLC_GSE143423 Human None 3 12,193 10x Genomics Metastatic All Wang L, et al.
NSCLC_GSE99254 Human None 14 12,346 Smart-seq2 Primary CD3+ T Guo X, et al. Nat Med 2018
OV_GSE115007 Human None 1 6,000 10x Genomics Primary DC, macrophages Tang-Huau TL, et al. Nat Commun 2018
OV_GSE118828 Human None 9 1,909 Smart-seq2 Pri, Meta All Shih AJ, et al. PLoS One 2018
PAAD_CRA001160 Human None 35 57,443 10x Genomics Primary All Peng J, et al. Cell Res 2019
PAAD_GSE111672 Human None 3 6,122 inDrop Primary All Moncada R, et al. Nat Biotechnol 2020
PBMC_30K_10X Human None 1 29,079 10x Genomics Normal Immune NA
PBMC_60K_10X Human None 1 63,628 10x Genomics Normal Immune NA
PBMC_8K_10X Human None 1 8,488 10x Genomics Normal Immune NA
SARC_GSE119352_mouse_aPD1aCTLA4 Mouse Immunotherapy NA 13,789 10x Genomics Primary Immune Gubin MM, et al. Cell 2018
SCC_GSE123813_aPD1 Human Immunotherapy 4 25,891 10x Genomics Metastatic All Yost KE, et al. Nat Med 2019
SKCM_GSE115978_aPD1 Human Immunotherapy 31 7,186 Smart-seq2 Pri, Meta All Jerby-Arnon L, et al. Cell 2018
SKCM_GSE120575_aPD1aCTLA4 Human Immunotherapy 32 16,291 Smart-seq2 Metastatic Immune Sade-Feldman M, et al. Cell 2018
SKCM_GSE123139 Human None 25 35,494 MARS-seq Pri, Meta Immune Li H, et al. Cell 2019
SKCM_GSE139249 Human None 4 39,884 10x Genomics Metastatic NK cells de Andrade LF, et al. JCI Insight 2019
SKCM_GSE148190 Human None 3 27,834 10x Genomics Metastatic Immune Mahuron KM, et al. J Exp Med 2020
SKCM_GSE72056 Human None 19 4,645 Smart-seq2 Metastatic All Tirosh I, et al. Science 2016
STAD_GSE134520 Human None 13 41,554 10x Genomics Primary All Zhang P, et al. Cell 2019
UCEC_GSE139555 Human None 3 12,758 10x Genomics Primary Immune Wu TD, et al. Nature 2020
UVM_GSE139829 Human None 11 103,703 10x Genomics Pri, Meta All Durante MA, et al. Nat Commun 2020